Books

Book chapters

Excitations in Inhomogeneous Media

Living Matter and Biological Materials

Multiscale Modeling and Simulation

Imperfections

Links to pdf files

Books

1. Deymier Ed. (2013), Acoustic Metamaterials and Phononic CrystalsSpringer Series in Solid-State Sciences Vol. 173
2. Deymier, Runge, Muralidharan (2016), Multiscale Paradigms in Integrated Computational Materials Science and EngineeringSpringer Series in Materials science Vol. 226
3. Deymier, Runge (2017), Sound Topology, Duality, Coherence and Wave-Mixing: An Introduction to the Emerging New Science of SoundSpringer Series in Solid-State Sciences Vol. 188

Book Chapters

1. Deymier, Vasseur, Runge, Lucas (2018), Separability and non-separability of elastic states in arrays of one-dimensional elastic waveguides, chapter3 in Phonons in low-dimensional structure, Vasilios N. Stravous (Ed), InTech Publisher
2. Schifrin, Deymier, Cohen (2014), Fetal Neurological Injury Related to Mechanical Forces of Labor and Delivery, L. Zhang (Ed) in Stress and Develolnent Programming in Health and Disease: Beyond Phenomenology. Nova Science, Chapter 18
3. Balachandran, Keswani, Deymier (2014), Megasonic cleaning for particle removal in Removal and Adhesion of Particles, K. Mittal (Ed), Wiley & Scrivener
4. Castro, Tapia, Silveyra, martinez, Deymier (2011), Negative impact of Paclitaxel Chrystallization on Hydrogels and Novel Approaches for Anticancer Drug Delivery Systems, in Current Cancer Treatment - Novel Beyond Conventional Approches, Oner Ozdemir (Ed), InTech, Open Access Publisher
5. Deymier, Kapila, Muralidharan (2004), Atomistic simulation methods, SPIE/ASME press, The Handbook of Nanotechnology "Nanometer Structure Theory, Modeling and Simulatiojn, A. Lakhtakia (Ed), Chapter 6

Excitations in Inhomogeneous Media

1. Deymier, Runge, Hasan, Lata, Levine (2023), Tuning logical phi-bit state vectors in an externally driven nonlinear array of acoustic waveguides via drivers' phase Quantum Reports 5 325
2. Deymier, Runge, Cutillas, Hasan, Lata, Levine (2023), Scalable exponentially complex representations of logical phi-bit states and experimental demonstration of an operable three phi-bit gate using an acoustic metastructure Appl. Phys. Lett. 122 141701
3. Deymier, Runge, Hasan, Lata, Levine, Cutillas (2023), Realizing acoustic qubit analogues with nonlinearly tunable phi-bits in exteranlly driven coupled acoustic waveguides" Scientific Reports 13 635
4. Deymier, Runge, Hasan, Levine, Cutillas (2022), Setting the stage for materials simulation using acoustic metamaterials digital quantum analogue computing platform Modelling Simul. Mater. Sci. Eng. 30 084003
5. Hasan, Deymier (2022), Modeling and simulations of a nonlinear granular metamaterial: application to geometric phase-based mass sensing Modelling Simul. Mater. Sci. Eng. 30 074002
6. Runge, Hasan, Levine, Deymier (2022), Demonstration of a two-bit controlled-NOT quantum-like gate using classical acoustic qubit-analogues Scientific Reports 12 14066
7. Lata, Deymier, Runge, Clark (2022), Topological acoustic sensing using nonseparable superpositions of acoustic waves Vibration 5 513
8. Deymier, Runge, Hasan (2022), Implementation of Deutsch and Deutsch-Josza-like algorithms involving classical entanglement of elastic bits Wave Motion 113 102977
9. Hasan, Lata, Lucas, Runge, Deymier (2022), Navigating the Hilbert space of elastic bell states in driven coupled waveguides Wave Motion 113 102966
10. Palacios, Calderin, Chon, Frankel, Alqasimi, Allein, Gorelik, Lata, Curradi, Lambert-Milak, Oke, Smith, Ghanem, Lucas, Boechler, Deymier (2022), Temperature-controlled spatiotemporally modulated phononic crystal for achieving nonreciprocal acoustic wave propagation J. Acoust.Soc. Am. 151 3669
11. Lata, Deymier, Runge, Ferriere, Huettmann (2022), Topological acoustic sensing of ground stiffness: Presenting a potential means of sensing warming permafrost in a forest Cold Regions Sci. and Tech. 199 103569
12. Deymier, Runge (2022), Revealing topological attributes of stiff plates by Dirac factorization of their 2D elastic wave equation Appl. Phys. Lett. 120 081701
13. Hasan, Runge, Deymier (2021), Experimental classical entanglement in a 16 acoustic qubit-analogue Scientific Reports 11 24248
14. Alu, Daraio, Deymier, Ruzzene (2021), Topological Acoustics Acoustics Today 17 13
15. Deymier, Runge, Hasan (2021), Topological properties of coupled one-dimensional chains of elastic rotators J. Appl. Phys. 129 084903
16. Deymier, Runge, Hasan (2020), Exponentially complex nonseparable states in planar arrays of nonlinearly coupled one-dimensional elastic waveguides J. Phys. Commun 4 085018
17. Deymier, Hasan, Runge (2020), Navigating the Hilbert space of nonseparable elastic states in arrays of periodically coupled one-dimensional waveguides AIP Advances 10 095101
18. Calderin, Hasan, Runge, Deymier (2020), Finite elements computational modeling of coupled elastic waveguides Appl. Phys. 128 045110
19. Hasan, Calderin, Lata, Lucas, Runge, Deymier (2020), Directional elastic pseudospin and nonseparability of directional and spatial degrees of freedom in parallel arrays of coupled waveguides Applied Sciences 10 3202
20. Hasan, Calderin, Lata, Lucas, Runge, Deymier (2020), Experimental demonstration of elastic analogues on nonseparable qutrits Applied Physics Letters 116 164104
21. Lata, Deymier, Runge, Le Tourneau, Ferriere, Huettmann (2020), Topological acoustic sensing of spatial patterns of trees in a model forest landscape Ecological Modelling 419 108964
22. Deymier, Runge, Hasan, Calderin (2019), Exponentially complex "classically entangled" states in arrays of one-dimensional nonlinear elastic waveguides materials 12 3553
23. Calderin, Hasan, Jenkins, Lata, Lucas, Runge, Deymier (2019), Experimental demonstration of coherent superpositions in an ultrasonic pseudospinScientific Reports 9 14156
24. Hasan, Calderin, Lata, Lucas, Runge, Deymier (2019), The sound of Bell states Nature Communications Physics 2 106
25. Hasan, Calderin, Lucas, Rung, Deymier (2019), Geometric phase invariance in spatiotemporal modulated elastic systemJ. Sound & Vib.459 114843
26. Hasan, Calderin, Lucas, Runge, Deymier (2019), Spectral analysis of amplitudes and phases of elastic waves: Application to topological elasticity Journal of the Acoustical Soc. of Amer. 146 748
27. Deymier, Runge (2019), Evidence for hidden order in a nonlinear model elastic system J. Phys.:Condens. Matter. 31 10LT01
28. Deymier, Runge, Vasseur, Hladky, Lucas (2018), Elastic waves with correlated directional and orbital angular momentum degrees of freedom J. Phys B: At. Mol. Opt. Phys. 51 135301
29. Deymier, Runge, Lucas, Vasseur (2018), Spacetime representation of topological phononics New J. Phys 20053005
30. Deymier, Runge (2018), Phase properties of elastic waves in systems constituted of adsorbed diatomic molecules on the (001) surface of a simple cubic crystal J. Appl. Phys. 123,125106
31. Deymier, Gole, Lucas, Vasseur, Runge (2017), Tailoring phonon band structures with broken symmetry by shaping spatiotemporal modulations of stiffness in a one-dimensional elastic waveguide Phys. Rev. B 96,064304
32. Croenne, Vasseur, Bou Matar, Ponge, Deymier, Hladky-Hennion, Dubus (2017), Brillouin scattering-like effect and non-reciprocal propagation of elastic waves due to spatio-temporal modulation of electrical boundary conditions in piezoelectric media Appl. Phys. Lett. 110, 061901
33. Deymier, Runge (2017), Non-separable states in a bipartite elastic system AIP Advances 7, 045020
34. Dubus, Swinteck, Muralidharan, Vasseur, Deymier (2016), Nonlinear phonon modes in second-order anharmonic coupled monoatomic chains J. of Vibrations an Acoustics 138, 041016
35. Deymier, Runge, Vasseur (2016), Geometric phase and topology of elastic oscillations and vibrations in model systems: Harmonic oscillator and superlattice AIP Advances 6, 121801
36. Deymier, Runge (2016) One-dimensional mass-spring chains supporting elastic waves with non-conventional topology Crystals 6, 44
37. Kunin, Yang, Cho, Deymier, Srolovitz (2016) Static and dynamic elastic properties of fractal-cut materials Extreme Mechanics Letters 6, 103
38. Swinteck, Matsuo, Runge, Vasseur, Lucas, Deymier (2015) Bulk elastic waves with unidirectional backscattering-immune states in a time-dependent superlattice J. Appl. Phys. 118, 063103
39. Deymier, Runge, Swinteck, Muralidharan (2015) Torsional topology & fermion-like behavior of elastic waves in phononic structures Comptes Rendus Mecanique 343, 700
40. Morvan, Tinel, Vasseur, Sainidou, Rembert, Hladky-Hennion, Swinteck, Deymier (2014) Ultra-directional source of longitudinal acoustic waves based on two-dimensional solid/solid phononic crystal J. Appl. Phys. 116, 21401
41. Swinteck, Lucas, Deymier (2014) Optically tunable acoustic wave band-pass filter AIP Adavances 4, 124605
42. Deymier, Vasseur, Runge, Manchon, Bou-Matar (2014) Phonon-magnon processes with relevance to acoustic spin pumping Phys. Rev. B 90, 224421
43. Deymier, Runge, Swinteck, Muralidharan (2014) Rotational modes in a phononic crystal with fermion-like behavior J. Appl. Phys. 115, 163510
44. Guerder, Deymier-Black, Swinteck, Vasseur, Bou-Matar, Muralidharan, Deymier (2014) Multi-phonon scattering processes in one-dimensional anharmonic biological superlattices: understanding the dissipation of mechanical waves in mineralized tissues J. Mechanical Behavior of Biomedical Materials 37, 24-32
45. Zhu, Swinteck, Wu, Zhang, Pan, Bass, Deymier (2013) Direct observation of the phonon dispersion of a three-dimensional solid/solid hypersonic colloidal crystal Phys. Rev. B 88, 144307
46. Swinteck, Muralidharan, Deymier (2013) Phonon scattering in one-dimensional anharmonic crystals and superlattices: analytical and numerical study J. of Vibration and Acoustics 135, 041016-1
47. Vasseur, Morvan, Tinel, Swinteck, Hladky-Hennion, Deymier (2012) Experimental evidence of zero-angle refraction and acoustic wave-phase control in a two-dimensional solid/solid phononic crystal Phys. Rev. B 86, 134305
48. Swinteck, Vasseur, Hladky-Hennion, Croenne, Bringuier, Deymier (2012) Multifunctional soli/solid phononic crystal J. Appl. Phys. 112, 024514
49. Bou Matar, Robillard, Vasseur, Hladky-Hennion, Deymier, Pernod, Preobrazhensky (2012) Band gap tunability of magneto-elastic phononic crystal J. Appl. Phys. 111,054901
50. Muralidharan, Erdmann, Runge and Deymier (2011) Asymmetric energy transport in defected boron nitride nanoribbons: implications for thermal rectification AIPAdvances 1, 041703
51. Vasseur, Bou Matar, Robillard, Hladky-Hennion and Deymier (2011) Band structure tunability of bulk 2D phononic crystals made of magneto-elastic materials AIPAdvances 1, 041904
52. Bringuier, Swinteck, Vasseur, Robillard, Runge, Muralidharan and Deymier (2011) Phase-controlling phononic crystals: Realization of acoustic Boolena logic gates J. Acoust. Soc. Amer. 130, 1919
53. Swinteck, Bringuier, Robillard, Vasseur, Hladky-Hennion, Runge and Deymier (2011) Phase-control in two-dimensional phononic crystals,J.Appl. Phys. 110,074507
54. Robillard, Bucay, Deymier, Shelke, Muralidharan, Merheb, Vasseur, Sukhovich, and Page (2011) Resolution Limit of a Phononic Crystal Superlens, Phys. Rev. B 83, 224301
55. Robillard, Muralidharan, Bucay, Deymier, Beck and Barker (2011) Phononic metamaterials for thermal management: An atomistic computational study, Chinese J. Phys 49, 448
56. Swinteck, Robillard, Bringuier, Bucay, Muralidharan, Vasseur, Runge, Deymier (2011) Phase-controlling phononic crystal, Appl. Phys. Letts 98, 103508
57. Pennec, Vasseur, Djafari-Rouhani, Dobrzynski, Deymier (2010) Two-dimensional phononic crystals: Examples and applications, Surface Science Reports 65, 229-291
58. Robillard, Bou Matar, Vasseur, Deymier, Stippinger, Hladky-Hennion, Pennec, Djafari-Rouhani (2009) Tunable magnetic elastic phononic crystals, Appl. Phys. Lett 95, 124104
59. Merheb, Deymier, Muralidharan, Bucay, Jain, Aloshyna-Lesuffleur, Greger, Mohanty, Berker (2009) Viscoelastic effect on acoustic band gaps in polymer-fluid composites, MSMSE 17, 075013
60. Bucay, Roussel, Vasseur, Deymier, Hladky-Hennion, Pennec, Muralidharan, Djafari-Rouhani, Dubus, Page (2009) Positive, Negative, zero refraction and beam splitting in a solid/air phononic crystal: Theoretical and experimental study, Phys. Rev. B 79, 214305
61. Sukhovich, Merheb, Muralidharan, Vasseur, Deymier, Page (2009) Experimental and Theoretical Evidence for Subwavelength Imaging in Phononic Crystals, Phys. Rev. Lett. 102, 154301
62. Deymier, Merheb, Vasseur, Sukhovich, Page (2008) Focusing of acoustic waves by flat lenses made from negatively refractive two-dimensional phononic crystals, Revista Mexicana de Fisica 54, 74-81
63. Merheb, Deymier, Jain, Aloshyna-Lesuffleur, Greger, Mohanty, Berker (2008) Elastic and viscoelastic effects in rubber-air acoustic band gap structures: a theoretical and experimental study, Journal of Applied Physics 104, 064913
64. Djafari-Rouhani, Vasseur, Hladky-Hennion, Deymier, Duval, Dubus, Pennec (2008) Absolute band gaps and waveguiding in free standing and supported phononic crystal slabs, Photonics and Nanostructures Fundamentals and Applications 6, 3237
65. Vasseur, Deymier, Djafari-Rouhani, Pennec, Hladky-Hennion (2008) Absolute forbidden bands and waveguiding in two-dimensional phononic crystal plates, Physical Review B 77 085415
66. Vaseur, Hladky-Hennion, Djafari-Rouhani, Duval, Dubus, Pennec, Deymier (2007) Waveguiding in two-dimensional piezoelectric phononic crystal plates, Journal of Applied Physics 101, 114904
67. Zhang, Jackson, Lafond, Deymier, Vasseur (2006) Evidence of surface acoustic wave band gaps in the phononic crystals created on thin plates, Applied Physics Letters 88, 041911
68. Vasseur, Deymier, Djafari-Rouhani, Pennec (2006) Absolute band gaps in two-dimensional phononic crystal plates Proc. IMECE2006, ASME Inter. Mech. Eng. Congress. 13353 1-9
69. Zhang, Jackson, Lafond, Deymier, Vasseur (2005) Surface acoustic wave band gaps and phononic structures on thin solid plates Proc. IMECE05, ASME Inter. Mech. Eng. Congress81029, 1-8
70. Vasseur, Deymier, Beaugeois, Pennec, Djafari-Rouhani, Prevost (2005) Experimental onservation of resonant filtering in a two-dimensional phononic crystal waveguide Z. Kristallogr. 220, 829-835
71. Chandra, Deymier, Vasseur (2004) Elastic wave propogation along waveguides in three-dimensional phononic crystals, Physical Review B 70, 054302
72. Pennec, Djafari-Rouhani, Vasseur, Khelif, Deymier (2004) Tunable filtering and demultiplexing in phononic crystals with hollow cylinders, Physical Review E 69, 046608
73. Pennec, Djafari-Rouhani, Vasseur, Deymier, Khelif (2004) Transmission and dispersion modes in phononic crystals with hollow cylinders:apllication to waveguide structure Phys. Stat. Sol. (c) 1, 2711-2715
74. Vasseur, Beaugeois, Djafari-Rouhani, Pennec, Deymier (2004) Transmission of acoustic waves through waveguide structures in two-dimensional phononic crystals Phys. Stat. Sol. (c) 1, 2720-2724
75. Khelif, Djafari-Rouhani, Vasseur, Deymier (2003) Transmission and dispersion relations of perfect and defect-containing waveguide structures in phononic band gap materials, Physical Review B 68, 024302
76. Khelif, Deymier, Djafari-Rouhani, Vasseur, Dobrzynski (2003) Two-dimensional phononic crystal with tunable narrow pass band: Application to a wavegude with slective frequency, Journal of Applied Physics 94, 1308-11
77. Vasseur, Deymier, Khelif, Lambin, Djafari-Rouhani, Akjouj, Dobrzynski, Fettouhi, Zemmouri (2002) Phononic crystal with low filling fraction and absolute acoustic band gap in the audible frequency range: A theoretical and experimental study, Physical Review E 65, 056608
78. Khelif, Djafari-Rouhani, Vasseur, Deymier, Lambin, Dobrzynski (2002) Transmittivity through straight and stublike waveguides in a two-dimensional phononic crystal, Physical Review B 65, 174308
79. Vasseur, Deymier, Chenni, Djafari-Rouhani, Dobrzynski, Prevost (2001) Experimental and theoretical evidence for the existence of absolute acoustic band gaps in two-dimensional solid phononic crystals, Physical Review Letters 86, 3012-15
80. Vasseur, Deymier, Frantziskonis, Hong, Djafari-Rouhani, Dobrzynski (1998) Experimental evidence for the existence of absolute acoustic band gaps in two-dimensional periodic composite media, Journal of Physical and Condensed Matter 10, 6051-64
81. Vasseur, Deymier (1997) Propagation of acoustic waves in periodic and random two-dimensional composite media J, Mater. Res. 12, 2207-2212
82. Vasseur, Djafari-Rouhani, Dobrzynski, Deymier (1997) Acoustic band gaps in fibre composite materials of boron nitride structure J. Phys.: Condens. Matter9, 7327-7341

1. Campbell, Ziolkowski, Cao, Laref, Muralidharan, Deymier (2013) Anisotropic permittivity of ultra-thin crystalline Au films: impacts on the plasmonic response of metasurfaces, Applied Phys. Lett. 103,091106
2. Laref, Cao, Asaduzzaman, Runge, Deymier, Ziolkowski, Miyawaki, Muralidharan (2013) Size-dependent permittivity and intrinsic optical anisotropy of nanometric gold thin films:a density functional theory study, Optics Express 21, 11827
3. Cao, Balachandran, Keswani, Muralidharan, Laref, Ziolkowski, Runge, Deymier, Raghavan, Miyawaki (2013) New plasmonic materials in visible spectrum through electrical charging, Proc. of SPIE 8632, 86321I
4. Djafari Rouhani, Vasseur, Akjouj, Dobrzynski, Kushwaha, Deymier, Zemmouri (1998) Giant stop bands and defect modes in one-dimensional waveguide with dangling side branches, Progress tn Surface Science 59, 255-264
5. Vasseur, Deymier, Dobrzynski, Choi (1998) Electronic band gaps in one-dimensional comb structures of simple metals, J. Phys.: Condens. Matter 10, 8973-8981
6. Deymier, Oumghar, Vasseur, Djafari-Rouhani, Dobrzynski (1997) Simple models of adsorbed polymers: Vibrational properties, Progress in Surface Science 53, 179-186
7. Vasseur, Deymier, Dobrzynski, Djafari-Rouhani, Akjouj (1997) Absolute band gap and electromagnetic transmission in quasi-one-dimensional comb structures Phys. Rev. B55, 10434
8. Akjouj, Mir, Djafari-Rouhani, Vasseur, Dobrzynski, Al-Wahsh, Deymier (2001) Giant magnonic band gaps and defect modes in serial stub structures: application to the tunneling between two wires, Surface Science 482-485, 1062-1067
9. Al-Wahsh, Akjouj, Djafari-Rouhani, Vasseur, Dobrzynski, Deymier (1999) Large magnonic band gaps and defect modes in one-dimensional comblike structures, Physical Review B 59, 8709-8719

1. Deymier, Runge (2022) Observation of discrete floquet time crystals in periodically driven acoustic bubbles,Crystals 12,399
2. Gole, Fishgold, Sierra-Alvarez, Deymier, Keswani (2018) Treatment of perfluorooctane sulfonic acid (PFOS) using a large scale sonochemical reactor,Separation and Purification Technology 194 104
3. Gole, Sierra-Alvarez,Peng,Giesy, Deymier, Keswani (2018) Sono-chemical treatment of per- and poly-fluoroalkyl compounds in aqueous film-forming foams by use of a large-scale multi-transducer dual-frequency based acoustic reactor, Ultrasonics-Sonochemistry 45 213
4. Deymier, Keswani, Jenkins, Tang, Runge (2016) Giant frequency down-conversion of the dancing acoustic bubble, Scinetific Reports 6, 37385
5. Balachandran, Patterson, Deymier, Snyder, Keswani (2016) Understanding acoustic cavitation fo sonolytic degradation of p-cresol as a model contaminant, Chemosphere 147, 52
6. Keswani, Raghavan, Deymier (2014) Electrochemical investigations of stable cavitation from bubbles generated during reduction of water, Ultrasonics Sonochemistry 21, 1893
7. Balachandran, Deymier, Raghavan, Keswani (2013) A sono-electrochemical technique for enhanced particle removal from tantalum surfaces, ECS Solid State Letters 3, 49
8. Keswani, Raghavan, Deymier (2013) A novel way of detecting transient cavitation near a solid surface during megasonic cleaning using electrochemical impedance spectroscopy, Microelectronic Engineering 108, 11
9. Keswani, Raghavan, Deymier (2013) Characterization pf transient cavitation in gas sparged solutions exposed to megasonic field using cyclic voltammetry, Microelectronic Engineering 102,91
10. Keswani, Raghavan, Deymier (2013) Effect of non-ionic surfactants on transient cavitation in a megasonic field, Ultrasonic Sonochemistry 20, 603
11. Kumari, Keswani, Singh, Beck, Liebscher, Deymier and Raghavan (2011) Control of sonoluminescence signal in deionized water using carbon dioxide, Microelectronic Engineering 88, 3437
12. Keswani, Raghavan and Deymier (2011) Study of bubble activity in a megasonic field using an electrochemical technique, IEEE Transactions on Semiconductor Manufacturing 24, 513
13. Mishra, Deymier, Muralidharan, Frantziskonis, Pannala, Simunovic (2010) Modeling the coupling of reaction kinetics and hydrodynamics in a collapsing cavity, Ultrasonics Sonochemistry 17, 258
14. Keswani, Raghavan, Deymier, Verhaverbeke (2009) Megasonic cleaning of wafers in electrolyte solutions: possible role of electro-acoustic and cavitation effects, Microelectronics Engineering 86, 132
15. Kapila, Deymier, Shende, Pandit, Raghavan, Eschbach (2006) Megasonic cleaning, cavitation, and substrate damage: an atomistic approach, Proc. SPIE, Photomask and Next-Generation Lithography Mask Technology XIII 6283, 1-12
16. Kapila, Deymier, Shende, Pandit, Raghavan, Eschbach (2005) Acoustic streaming effects in megasonic cleaning of EUV photomasks: a continuum model, Proc. of SPIE 5992, 59923X-1
17. Khelif, Vasseur, Lambin, Djafari-Rouhani, Deymier (2002) Theory of acoustic scattering by supported ridges at a solid-liquid interface, Physical Review E 65, 036601
18. Deymier, Vasseur, Khelif, Raghavan (2001) Second-order sound field during megasonic cleaning of patterned silicon wafers: Application to ridges and trenches, Journal of Applied Physics 90, 4211-4218
19. Deymier, Vasseur, Khelif, Djafari-Rouhani, Dobrzynski, Raghavan (2000) Streaming and removal forces due to second-order sound field during megasonic cleaning of silicon wafers, Journal of Applied Physics 88, 6821-6835
20. Deymier, Khelif, Djafari-Rouhani, Vasseur, Raghavan (2000) Theoretical calculation of the acoustic force on a patterned silicon wafer during megasonic cleaning, Journal of Applied Physics 88, 2423-2429

Living Matter and Biological Materials

1. Castro, Tapia, Silveyra, Martinez and Deymier (2011) Negative impact of Paclitaxel crystallization on hydrogels and novel approaches for anticancer drug delivery systems in Current Cancer Treatment - Novel Beyond Conventional Approaches ISBN 978-953-307-397-2, 767
2. Castro, Deymier, Trzaskowski, Bucay (2010) Heterogeneous and homogeneous nucleation of Taxol crystals in aqueous solutions and gels: Effect of tubulin proteins , Colloids & Surfaces B: Biointerfaces 76, 199-206
3. Castro, Trzaskowski, Deymier, Bucay, Adamowicz, Hoying (2009) Binding affinity of fluorochromes and fluorecent proteins to Taxol (TM) crystals, Materials Science and Engineering C 29,1609-1615
4. Valenzuela, Raghavan, Deymier, Hoying (2008) Formation of Copper Nanowires by Electroless Deposition using Microtubules as Templates, Journal of Nanoscience and Nanotechnology 8, 3416
5. Umnov, Paluzinski, Barnaby, Yang, Raghavan, Guzman, Hoying, Deymier (2007) Experimental evaluation of electrical conductivity of microtubules, Journal of Materials Science 42, 373-378
6. Yang, Deymier, Wang, Guzman, Hoying, McLaughlin, Smith, Jongewaard (2006) Nucleation and Growth of Microtubules from g-tubulin-functionalized gold surfaces, Biotechnol. Prog. 22, 303-312
7. Stepanian, Traskowski, Deymier, Guzman, Adamowicz (2006) Selectivity of the chelator-protein interactions: a high level quantum chemisstry study, J. of Computational and Theoretical Nanoscience 3, 1-10
8. Deymier, Yang, Hoying (2005) Effect of tubulin diffusion on polymerization of microtubules, Physical Review E 72, 021906
9. Trzaskowski, Les, Adamowicz, Deymier, Guzman, Stepanian (2005) Multilevel quantum chemistry approach to the development of a database of SAM-ligand-metal ion preotein interactions J. of Computational and Theoretical Nanoscience 2, 1-13
10. Castro, Deymier, Smith, Hoying (2008) Morphology of microtubules grown in agarose gels: effect of diffusion and confinement, Advanced Materials 20, 183-188
11. Trzaskowski, Adamowicz, Deymier (2008) A theoretical study of zinc(II) interactions with amino acid models and peptide fragments, J Biol Inorg Chem 13, 133-137
12. Trzaskowski, Deymier, Adamowicz (2006) Metallization of nanobiostructures: a theoretical study of copper nanowires growth in microtubules, J. Mater. Chem. 16, 4649-4656
13. Yang, Guzman, Deymier, Umnov, Hoying, Raghavan, Palusinski, Zelinski (2005) Adsorption of a microtubule on a charged surface affects its disassembly dynamics J. of Nanoscience and Naotechnology 5, 2050-2056
14. Yang, Constance, Deymier, Hoying, Raghavan, Zelinski (2004) Electroless metal plating of microtubules: Effect of microtubules-associated proteins, J. Materials Science 39, 1927-1933

1. Deymier, Runge (2020) Biochemical basis of quantum-like neuronal dynamics , Brain Multiphysics 1, 100017
2. Sun, Hoying, Deymier, Zhang, Wong (2016) Cellular architecture regulates collective calcium signaling and cell contractility , PLOS Computational Biology
3. Deymier, Swinteck, Runge, Deymier-Black, Hoying (2015) Effect of sound on gap-junction-based intercellular signaling: Calcium waves under acoustic irradiation , Phys. Rev. E 92, 052711
4. Long, Deymier, Runge, Hoying (2015) Regulation of the frequency and wavelength of calcium waves propagating in networks of interconnected cells: A simulation study , Trends in Cell & Molecular Biology 9,21
5. Junkin, Lu, Long, Deymier, Hoying, Wong (2013) Mechanically induced intercellular calcium communication in confined endothelial structures , Biomaterials 34,2049
6. Long, Junkin, Wong, Hoying, Deymier (2012) Calcium wave propagation in Networks of Endothelial cells: Model-based theoretical and experimental study , PLOS Computational Biology8,e1002847
7. Junkin, Lu, Deymier and Wong (2011) An integrated mechanostimulation system for probing architecture based calcium signaling in HUVEC cells , Proceedings of 24th IEEE Intern. Conf.on MEMS Cancun Mexico 893
8. Deymier, Runge, Hoying, Deymier, Vasseur (2010) Calcium wave propagation in chains of endothelial cells with non-linear reaction dynamics: Green's function approach , Phys. Rev. E 82, 041913
9. Deymier, Eray, Deymier, Runge, Hoying, Vasseur (2010) Architecture-dependent signal conduction in model networks of endothelial cells , Phys. Rev. E 81, 041915
10. Eray, Deymier, Hoying,Runge, Vasseur (2008) Resonant filtering of compositional waves in multicellular networks, Physica D 237, 2777-2780

Multiscale Modeling and Simulation

1. Frantziskonis, Muralidharan, Deymier, Simunovic, Nukala, Pannala (2009) Time-parallel multiscale/multiphysics framework, J. Comput. Phys. 228, 8085
2. Mishra, Muralidharan, Frantziskonis, Deymier, Simunovic, Pannala (2008) Wavelet based spatial scaling of coupled reaction diffusion fields, Int. J. Multiscale Compu. Engr. 6, 281
3. Mishra, Muralidharan, Pannala, Simunovic, Daw, Nukala, Fox, Deymier, Frantziskonis (2008) Spatiotemporal compound wavelet matrix framework for multiscale/multiphysics reactor simulation: Case study of a heterogeneous reaction/diffusion system, International Journal of Chemical reactor Engineering 6, A28
4. Muralidharan, Mishra, Frantziskonis, Deymier, Pannala, Simunovic (2008) Dynamic compound wavelet matrix method for multiphysics and multiscale problems, Physical Review E 77, 026714
5. Frantziskonis & Deymier (2003) Wavelet-based spatial and temporal multiscaling: Bridging the atomistic and continuum space and time scales, Physical Review B 68, 024105
6. Frantziskonis & Deymier (2000) Wavelet methods for analysing and bridging simulations at complementary scales—the compound wavelet matrix and application to microstructure evolution, Modelling Simul. Mater. Sci. Eng. 8 649-664

1. Manga, Bringuier, Paul, Jayaraman, Lucas, Deymier, Muralidharan (2014) Molecular dynamics simulations and thermodynamic modeling of NaCl-KCl-ZnCl2 ternary system, CALPHAD: Computer coupling of phase diagrams and thermochemistry 46, 176
2. Trickey, Yip, Cheng, Rung, Deymier (2006) A perspective on multi-scale simulation: Toward understanding water-silica, Journal of Computer-Aided Materials Design 13, 1-12
3. Deymier, Oh, Muralidharan, Frantzikonis, Runge (2006) Selection of domains for coarse and fine levels of description in mixed-potential simulations, Journal of Computer-Aided Materials Design 13, 17-44
4. Muralidharan, Mallik, Runge, Deymier (2006) Implementation of consistent embedding for a larger system–Amorphous silica, Journal of Computer-Aided Materials Design 13, 61-73
5. Muralidharan, Deymier, Simmons (2003) A Concurrent multiscale finite difference time domain/molecular dynamics method for bridging an elastic continuum to an atomic system, Modelling Simul. Mater. Sci. Eng. 11, 487-501
6. Deymier & Vasseur (2002) Concurrent multiscale model of an atomic crystal coupled with elastic continua, Physical Review B 66, 134106
7. Trickey, Deymier (2001) Challenges and state of the art in simulation of chemo-mechanical processes Chemical Mechanical Planarization IV, Proc. 4th Inter. Symp. on Chemical Mechanical Planarization, 198th meeting of the Electrochemical Soc. Ed. R.L. Opik, C. Reidsema-Simpson, K.B. Sundaram, S. Seal, 3

1. Cherne, Baskes, Deymier (2002) Erratum: Properties of liquid nickel: A critical comparison of EAM and MEAM calculations, Physical Review B 66, 149902
2. Cherne, Baskes, Deymier (2001) Properties of liquid nickel: A critical comparison of EAM and MEAM calculations, Physical Review B 65, 024209
3. Cherne & Deymier (2001) Calculation of the transport properties of liquid aluminum with equilibrium and non-equilibrium molecular dynamics, Scripta Materialia 45, 985-991
4. Cherne & Deymier (1998) Calculation of viscosity of liquid nickel by molecular dynamics methods, Scripta Materialia 39, 1612-1616

1. Oh & Deymier (2004) Effect of temperature on the formation of electronic bound states in an expanded bcc hydrogenoid crystal: A restricted path-integral molecular dynamics simulation, Physical Review B 69, 155101
2. Deymier & Oh (2004) Formation of bound states in expanded metal studied via path integral molecular dynamics, Modelling Simul. Mater. Sci. Eng. 12, 197-204
3. Deymier & Oh (2000) Interplay between electronic and atomic structure in expanded Żuid potassium: a path-integral molecular dynamics study, Journal of Non-Crystalline Solids 274, 364-372
4. Oh & Deymier (1999) Simulation of crystal and liquid potassium via restricted path-integral molecular dynamics, Physical Review B 59, 11276-11285
5. Oh & Deymier (1998) Path-integral molecular dynamics calculations of electron plasma, Physical Review Letters 81, 3104-3107
6. Oh & Deymier (1998) Ab initio molecular-dynamics method based on the restricted path integral: Application to the electron plasma and liquid alkali metal, Physical Review B 58, 7577-7584
7. Lee & Deymier (1997) Two-electron States in Ba_0.6K_0.4BiO₃ via discretized path integral molecular dynamics, Solid State Communications 102, 653-657
8. Deymier, Jabbour, Weinberg, Cherne (1996) Electronic and atomic structure of liquid potassium via path integral molecular dynamics with non-local quantum exchange, Modelling Simul. Mater. Sci. Eng. 4, 137-150
9. Jabbour & Deymier (1994) Discretized path integral molecular dynamics with a non-local pseudopotential: simulation of the 3s and 3p states in the sodium atom, Modelling Simul. Mater. Sci. Eng. 2, 1111-1121
10. Iyer, Jabbour, Deymier, Leef (1993) Simulation of electrons solvated in molten salt: a discretized path integral molecular dynamics study with quantum indistinguishability at high temperature, Modelling Simul. Mater, Sd. Eng. 1, 361-372
11. Lee & Deymier (1992) Electron-phonon coupling in Ba_0.6K_0.4BiO₃ by discretized quantum path integral molecular dynamics, Physica C 190, 299-303
12. Lee & Deymier (1991) Vibrational properties of Ba_1-xK_xBiO₃: a molecular dynamics study, Physica B 168, 268-272

1. Kapila, Deymier, Raghavan (2006) Molecular dynamics simulations of friction between alkylsilane monolayers, Modelling Simul. Mater. Sci. Eng. 14, 283-297
2. Kapila, Almanza-Workman, Deymier, Raghavan (2004) Two-dimensional Monte Carlo simulations of ionic and nonionic silane self-assembly on hydrophilic surfaces, J Chem Phys 120, 9277-9285
3. Almanza-Workman, Raghavan, Deymier, Monk, Roop (2004) Aqueous silane-surfactant co-dispersions for deposition of hydrophobic coatings onto pre-oxidized polysilicon, Colloids and Surfaces A: Physicochem. Eng. Aspects 232, 67-75
4. Almanza-Workman, Raghavan, Petrovic, Gogoi, Deymier, Monk, Roop (2003) Characterization of highly hydrophobic coatings deposited onto preoxidized silicon from water dispersible organosilanes, Thin Solid Films 423, 77-87
5. Kapila, Harris, Deymier, Raghavan (2002) Effect of long-range and steric hydrophilic interactions on micellization of surfactant solutions: A Monte Carlo study in 2-D, Langmuir 18, 3728-3736
6. Almanza-Workman, Raghavan, Deymier, Monk, Roop (2002) Water dispersible silanes for wettability modification of polysilicon, Journal of The Electrochemical Society 149, H6-H11

1. Muralidharan, Oh, Deymier, Runge, Simmons (2007) Molecular dynamics simulations of atomic-level brittle fracture mechanisms in amorphous silica, J Mater Sci 42, 4159-4169
2. Muralidharan, Simmons, Deymier, Runge (2007) Molecular dynamics studies of brittle fracture in vitreous silica: Review and recent progress, Journal of Non-Crystalline Solids 351, 1532-1542

1. Asaduzzaman, Zega, Laref, Runge, Deymier, Muralidharan (2014) A computational investigation of adsorption of organics on mineral surfaces: Implications for organic delivery in the early solar system, Earth & Planetary Sci. Lett. 408, 355
2. Asaduzzaman, Laref, Deymier, Runge, Cheng, Muralidharan, Drake (2013) A first-principle characterization of water adsorption on forsterite grains, Phil. Trans. Roy. Soc. A 371,20110582
3. de Leeuw, Catlow, King, Putnis, Muralidharan, Deymier, Stimpfl, and Drake (2010) Where on Earth has our water come from? Coverpage, Chem. Commun. 46, 8923
4. King, Stimpfl, Deymier, Drake, Catlow, Putnis, de Leeuw (2010) Computer simulations of water interactions with low-coordinated forsterite surface sites: Implications for the origin of water in the inner solar system, Earth & Planetary Sciences Letters 300, 11-18
5. Muralidharan, Deymier, Stimpfl, de Leueuw, Drake (2008) Origin of water in the inner solar system: A kinetic Monte Carlo study of water adsoprtion on forsterite, Icarus 198, 400
6. Stimpfl, Walker, Drake, de Leeuw, Deymier (2006) An angstrom-sized window on the origin of water in the inner solar system: atomistic simulation of adsoprtion of water on olivine, J. Crystal Growth 294, 83
7. Stimpfl, Drake, De Leeuw, Deymier, Walker (2006) Effect of composition on adsorption of water on perfect olivine surfaces, Goldschmidt Conference Abstracts A615

1. Li, Ari, Deymier, Lucas (2022) Broadband pyramid antireflective structure on chalcogenide glasses by the hot embossing method for infrared photonic, Optical Materials Express 12,1638
2. Li, Khanolkar, Ari, Deymier, Lucas (2021) Origin of photoelastic phenomena in Ge-Se network glasses, Phys. Rev. B 104 214209
3. Asaduzzaman, Runge, Deymier, Muralidharan (2020) Effect of ligand adsorption on the electronic properties of the PbS(100) surface, Langmuir
4. Alsayoud, Rao, Muralidharan, Vita, Bringuier, Runge, Deymier (2018) Atomistic insights into the effect of polymerization on the thermophysical properties of 2-D C60 molecular solids, Carbon 133 267
5. Lucas, Coleman, Rao, Edwards, Devaadithya, Wei, Alsayoud, Potter, Muralidharan, Deymier (2017) Structure of ZnCl2 melt. Part II: Fragile-to-strong transition in a tetrahedral liquid, J. Phys. Chem. B 121 11210
6. Alsayoud, Rao, Edwards, Deymier, Muralidharan, Potter, Runge, Lucas (2016) Structure of ZnCl2 melt. Part I: Raman spectroscopy analysis driven by Ab Initio methods, J. Phys. Chem. B 120, 4174
7. Rao, Swinteck, Bringuier, Lucas, Deymier, Muralidharan (2016) Interplay between structure and transport properties of molten salt mixtures of ZnCl2-NaCl-KCl: A molecular dynamics study, J. Chem Phys 144, 094501
8. Gnanaprakasa, Sridhar, Beck, Runge, Potter, Zega, Deymier, Muralidharan (2015) Graphene mediated self-assembly of fullerene nanorods, Chem. Comm. 51, 1858
9. Trzaskowski, Adamowicz, Beck, Muralidharan, Deymier (2014) Exploring structures and properties of new geodesic polyarenes, Chem. Phys. Lett. 595-596, 6
10. Trzaskowski, Adamowicz, Beck, Muralidharan, Deymier (2013) Impact of local curvature and structural defects on graphene-C60 fullerene fusion reaction barriers, J. Physical Chemistry C 117, 19664
11. Laref, Asaduzzaman, Beck, Deymier, Runge, Adamowicz, Muralidharan (2013) Characterization of graphene-fullerene interactions: Insights from density functional theory, Chem Phys. Lett. 582,115
12. Villela, Kasinathan, De Valle, Alvarez, Frantziskonis, Deymier and Muralidharan (2010) Compressed-air energy storage systems for stand-alone off-grid photovoltaic modules, Proceedings of 35th IEEE PVSC Coference, Hawaii, 962
13. Frantziskoni & Deymier (2006) Surface effects at the nanoscale significantly reduce the effects of stress concentrators, Probabilistic Engineering Mechanics 21, 277-286
14. Frantziskoni & Deymier (2006) The effects of stress concentrators on strength of materials at nanoscale: A molecular dynamics study, Mechanics Research Communications 33, 352-358
15. Muralidharan, Simmons, Deymier, Runge (2005) Molecular dynamics studies of brittle fracture in vitreous silica: Review and recent prograss J. Non-Crystalline Solids 351, 1532-1542
16. Phule, Deymier, Risbud (1990) Molecular dynamics simulations of some amorphous and crystalline photonic materials J. Mater. Res. 5, 1104-1109
17. Deymier, Sargent (1990) Molecular Dynamics simulation of thin-film growth and relaxation Proc. SPIE, Modeling of Optical Thin Film II 1324, 120-130
18. Kumta, Deymier, Risbud (1989) Glass formation in simple ionic systems via constant pressure molecular dynamics, J chem Phys 90, 7384-7394
19. Kumta, Deymier, Risbud (1988) Improved rigid ion model of molten zinc chloride, Physica B 153, 85-92
20. Deymier & Kalonji (1986) Calculation of free energies of Lennard-Jones crystals via molecular dynamics, J Chem Phys 85, 2937-2942
21. Deymier (1988) Atomistic model of orthorhombic YBa₂Cu₃O₇, Physical Review B 38, 6596-6603
22. Deymier, Vasseur, Dobrzynski (1997) Anomalous exponent in the kinetics of grain growth with anisotropic interfacial energy, Physical Review B 55, 205-211
23. Deymier, Jung, Raghavan (1994) Molecular dynamics of magnetic particulate dispersions, J Appl Phys 75, 5571-5573

Imperfections

1. Bringuier, Manga, Runge, Deymier, Muralidharan (2015) Grain boundary dynamics of SiC bicrystals under shear deformation, Mat. Sci. & Engr. A 634, 161
2. Shamsuzzoha, Deymier, Smith (1996) HREM study of 45^o [100] quasiperiodic grain boundary in aluminum, Scripta Materialia 35, 327-331
3. Shamsuzzoha, Vasquez, Deymier, Smith (1996) The atomic structure of a sigma=5[001]/(310) grain boundary in an Al-5% Mg alloy by high resolution electron microscopy, Interface Science 3, 227-234
4. Deymier & Vasseur (1995) Electronic contribution to the point defect/curvedinterface binding energy. Effect on segregation of curved interfaces, Vacuum 46, 517-521
5. Deymier, Vasseur (1994) Effect of curvature on interfacial segregation: electronic contribution to the point defect/interface binding energy, Interface Science 2, 147-152
6. Vasseur, Deymier, Djafari-Rouhani, Dobrzynski (1993) Theoretical aspects of solute segregation to high-angle graon boundaries, Interface Science 1, 49-60
7. Vasseur, Deymier (1993) Effect of the character of high-angle grain boundaries on segregation: an elastic model Interface science 1, 123-131
8. Welnberg, Shamsuzzoha, Deymier (1992) Molecular dynamics simulations of 45^o [100] twist plus tilt grain boundaries in aluminum, Ultramlcroscopy 40, 240-246
9. Shamsuzzoha, Deymler, Smith (1992) Morphology of silicon grain boundaries in Sr-modified AI-Si eutectic alloys by HREM, Ultramlcroscopy 40, 265-270
10. Vasseur, Deymier, Akjouj, Dobrzynski, Djafari-Rouhani (1992) Electronic energies of interaction of point defects with interfaces and grain boundaries, Acta Physica Polonica 81, 39-46
11. Shamsuzzoha, Smith, Deymier (1991) The atomic structure of a [100], 45o twist plus 17.5o tilt grain boundary in aluminum by high-resolution electron microscopy, Philosophical Magazine 64, 719-733
12. Shamzuzzoha, Deymier, Smith (1991) A high resolution electron microscopy study of secondary dislocations in sigma=3, [-110]-(-11) grain boundaries of aluminum, Philosophical Magazine A 64, 245-253
13. Shamsuzzoha, Hogan, Smith, Deymier (1991) A transmission and high-resolution electron microscope study of cozonally twinned growth of eutectic silicon in unmodified Al—Si alloys, Journal of Crystal Growth 112, 635-643
14. Deymier, Shamsuzzoha, Weinberg (1991) A study of grain boundary translational states in a Σ3[`110]/(`1`11) bicrystal, Acta metall. mater. 39, 1571-1577
15. Deymier, Shamsuzzoha, Weinberg (1991) Experimental evidence for a structural unit model of quasiperiodic grain boundaries in aluminum, J. Mater. Res. 6, 1461-1468
16. Shamsuzzoha, Smith, Deymier (1990) Atomic structure of a 6^• [001]/(110) tilt grain boundary in aluminum by HREM, Scripta Metallurgica 24, 1611-1615
17. Shamsuzzoha & Deymier (1990) Preparation of some specific grain boundaries in aluminum for HREM studies by cold rolling and annealing, Scripta Metallurgica 24, 1303-1306
18. Shamzuzzoha, Hogan, Smith, Deymier (1990) HREM studies on twinning behaviour of eutectic silicon in unmodified and Sr-modified Al-Si alloys, Proc. XIIth Inter. Congress for Electron Microscopy,4,968-969
19. Shamzuzzoha, Deymier, Smith (1990) High resolution imaging of symmetric tilt and mixed character boundaries in AL, Proc. XIIth Intern. Congress for Electron Microscopy4,336-337
20. Deymier, Taiwo, Kalonji (1987) A grain boundary phase transition studied by molecular dynamics, Acfa metall. 35, 2719-2730
21. Deymier & Kalonji (1986) Effect of grain boundary melting on sliding in bicrystals: A molecular dynamics study, Scripta Metallurgica 20, 13-17
22. Kalonji, Deymier, Najafabadi, Yip (1984) A molecular dynamics study of grain boundary phase equilibria: the case of the Σ=13 boundary, Surface Science 144, 77-83
23. Deymier, Janot, Li, Dobrzynski (1989) Elastic energy of interaction of a point defect with a grain boundary, Physical Review B 39, 1512-1517
24. Deymier, Kalonji (1985) Computer simulation of the thermodynamic properties of grain boundaries, Journal de Physique Colloque C4 46, 213