Department of Psychology, University of Arizona
Perceptual Learning book Coronavirus article )TRIBUTE
Univeristy of Pennsylvania
Solong for now
Pic circa 1987, photographer Susan Rakwotiz, all rights reserved firstname.lastname@example.org. Reprinted with permission.
Early in the pandemic,I analyxed the genetic sequences of coronavirus COViD-19 (SARS-CoV2) that were publicly available and created neighbor joining networks (trees). They would have been useful for tracking the geographic origins of an outbreak and keeping track of strains. See links below.
Starting early April 2020, I had gathered evidence for what I think is the solution to the mystery that was growing for the seemingly baffling range of characteristics that made serious, even fatal, infection more likely, such as being a man or being very overweight. I had to leave the project for a while but got back to it and finished it up in late Septermber 2020 COVID-19 article
March 25, 2020 tree There are 104 publically available seqeunces. Notably absent are USA new sequences, including New York, New Jersey and Pennsylvnaia. Why aren't these being deposited as is standard for genetic data? Sequences from Valencia are striking with differences from other regions and each other. Valencia is all the way to the East of Spain, with Italy next door. Perhaps their sources are Italy whose explosion in cases may have allowed many surviving variants Note perhaps NY would look just as diverse, were they to be availailable (most Italy sequences not available either). This alread;y increaseing diversity of the DNA from Valencia, whether from Italy or local, raises issue of new more virulent or deadly strains lurking within and also may limit the time that those recovered from a COVID-19 infection can enjoy immunity, especially with travel. Finally, inspecting sequences from USA cruise ship finds many identical to original Chinese source virus. However, at least one is ve;ry diffrent and whether this reflects infection not actually from the curise ship or rapid mutation on the ship itself is unknown.
March 6, 2020 tree There are 48 publically available sequences. We can see the Illinois/CA 2 cluster may have been developing there for weeks, something not talked about in the news. Also note the greatest genetic diversity in the USA is in California; placement in the tree suggests this is not from community spread but from multiple independent episodes of infection from elsewhere.
Top 10 interests
1) Genetics in psychology, evolution, and medicine
2) Perception and well-being including mindfulness, guided imagery, and the immune system as the sixth perceptual sense
3) Effects of experience on perception and varieties of perceptual learning, plasticity, and adaptation (including prism adaptation, ventriloquism, MCCollough Effect, wine tasting (see book)
4) Mitochondrial DNA in population genetics, disease, and energy, especially haplogroup T
5) Genetics of Jewish populations, especially Sephardim, Conversos, CryptoJews, Mizrahi, Romaniot, Latin America
6) Application of perception to society including expert testimony on cross-racial perceptual ID eyewitness identification, "other race effect"
7) Parallels between perception of space and time
8) Mathematical models including perceptual-motor development, pointing in adults, children, and non-humans, learning, pandemics
9) Spatial challenges such as getting lost, left-right confusion, trouble assembling puzzles
10) The puzzles of “object identity” Jump to little-known publication and the “Not the Liver Fallacy”
I was born in Brooklyn, New York from ancestors in the Ottoman Empire, Spain, southern Italy, Yorkshire England, Alsace, and pre-revolutionary USA. My Ph.D.is from the University of Pennsylvania.
If any of the following apply, please feel free to email.
Are you of Mexican descent and descended from Isabel de Castro y
Figueroa, born Spain circa 1570? (or from Inez de la Cerda y Castro?)
Do you have mitochondrial DNA haplogroup T2e?
Do you do research on the metabolism of tyramine?�
Are you missing a sense of direction? Get lost wherever you go?
Confuse left with right? Other spatial challenges?
Are you interested in using mindfulness meditation and imagery to heal illness? (especially autoimmunity)
Are you Sephardic or Romaniote and interested in genetic testing?
Do you have hereditary hemochromatosis and are interested in genetic testing?
SMail: University of Arizona, Department of Psychology, PO Box 210068, Tucson, AZ 85721
Web courses: Perceptual Learning, Intro Psych, Genetics in Psychology
Interested in developing: Longevity and age reversal
The brick and mortar version of the Intro Psych course won a creative teaching award. I estimate I have taught Intro Psych to at least 5,000 students.
Book on perceptual learning and adaptation:
Bedford, F. L. (2019 Kindle fire tablet, 2013 print edition,). All Cab Drivers Look Alike: The Science of Changing Perception Through Experience. Tivoli Press. 380 pages, 71 illustrations Amazon Barnes & Noble Bulk Sales
"I haven't had a chance to actually read your book yet, but it looks fascinating." ALAN ALDA, award-winning actor, director, and science educator
"Your book was very inspirational and I kept putting it down to jot down ideas."DR. MARK S. RIDER, Clinical Psychologist, Texas
"I read the book (Cab Drivers), really loved it! I especially like how your tone in the book is casual, a few times I laughed out loud. That is my preferred way of reading and I bet student's will like it also in the case that it becomes assigned reading for someone." SABRINA PETERSON, graduate student, University of California, Riverside
"I was reading and reading and re reading and it looks like you were writing my mind. How
curious and original�� PEDRO MARTINEZ� Info Technologist
Link missing? Contact
author for a copy.
Link missing? Contact author for a copy.
Bedford, F.L. (2020). Bat evolution, demographic data, and pre-existing conditions solve mystery of who dies from Coronavirus Infectious Disease-19.
Bedford, F.L. & Greshake Tzovaras, B. (2020) Re-analysis of genetic risks for Chronic Fatigue Syndrome from 23andMe data finds few remain. doi: https://www.medrxiv.org/content/10.1101/2020.10.27.20220939v2
Bedford, F.L. 6-degrees of Lassie (2020): The population genetics of the collie dog. Newsletter of the Collie Rescue of Southeastern Pennsylvania, Winter 2020.
Bedford, F.L. (2019) Jack the Ripper or Ripoff: mtDNA analysis of Jack the Ripper forensic evidence. Journal of Forensic Sciences https://onlinelibrary.wiley.com/doi/10.1111/1556-4029.14192
Bedford, F. L. (2017 A prism-adaptation based theory of psychological treatment for autoimmune disorders. Autoimmune Diseases and Therapeutic Approaches
Yacobi & Bedford (2016) Evidence of early gene flow between Ashkenazi Jews and non-Jewish Europeans in mitochondrial DNA haplogroup H7, Journal of Genetic Genealogy, 8(1):21-34
Bedford, F.L., (2016) Perceptual mindfulness and imagery for chronic pain and skin disorders in a busy college population In Merrick, J (ed.), Health and Human Development, Pain Management Nova Science Publishers, Chapter 5, 61-72.
Bedford, F.L. (2015). Perceptual mindfulness and imagery for chronic pain and skin disorders in a busy college population. Journal of Pain Management, 8 (1), 55-63 article
Bedford, F. L. & Yacobi, D. (2014) On two Jewish clades in mitochondrial DNA. European Journal of Human Genetics. doi: 10.1038/ejhg.2014.231 Online ahead of print, Nov 5, 2014 .article
Bedford, F. L. (Dec. 22, 2013). Announcement of a new publication on Sephardic genetics. eSefarad: Noticias del Mundo Sefaradi� article
Bedford, F. L., Yacobi, D., Felix, G., & Garza, F. (2013). Clarifying mitochondrial DNA subclades of T2e from Mideast to Mexico. Journal of Phylogenetics and Evolutionary Biology, 2, 4, 1-8. article
Bedford, F. L. (2012). A perception theory in mind-body medicine: guided visual imagery and mindful meditation as cross-modal adaptation. Psychonomic Bulletin and Review (DOI: 10.3758/s13423-011-0166-x) article �� ffull textt
Bedford, F. L. (2012) Sephardic Signature in Haplogroup T mitochondrial DNA. European Journal of Human Genetics (DOI: 10.1038/ejhg.2011.200) article
Bedford, F. L. (2011) The missing sense modality: The immune system.� Perception, 40, 1265-1267. (DOI:10.1068/p7119). article
Bedford, F.L. (2011) Mystery of the anti-McCollough Effect. Attention, Perception, and Psychophysics. (DOI: 10.3758/s13414-011-0163-1). article
Bedford, F. L. (November 2011). Imagine your pain away. Arizona Daily Star,
Science supplement. newspaper article scroll to page 529, bottom
Bedford, F. L. & Mansson, B.� �(2010) Object Identity, Apparent Motion, Transformation geometry.� Current Research in Psychology,1, 35-52.
Bedford, F. L. (2007) Is prism adaptation for growth? Perceptual and Motor Skills, 105, 351-354. Abstract
Bedford, F. L. (2007) Can a space perception conflict be solved using three sense modalities? Perception, 36, 508-515. Article (html) Note: footnotes and some formatting lost in the html version.
Bedford, F. L. (October 2, 2005). A broken watch is right twice a day. Letter to the editior, New York Times, Sunday Magazine.
Bedford, F. L. (2004) Analysis of a constraint on perception, cognition, and development: One object, one place, one time. Journal of Experimental Psychology, Human Perception and Performance, 30, 907-912. Article (pdf file) Article (html file) ( Abstract only) (This article discusses is there such a constraint? What does it mean to have such a constraint? What are its implications? When might it arise?)
Bedford, F. (Sept. 5, 2004). The cost of cost analysis. Letter to the editor, New York Times, Sunday Business.
Bedford, F. L. (2003). More on the Not-the-Liver Fallacy: Medical, neuropsychological, and perceptual dissociations. Cortex, 39, 170-173. Article (pdf file) or Cortex website (This article is a follow up on my 1997 paper. Both articles argue that inferring mental organs from dissociations (and double dissociations) leads to false categories in psychology that would be like inferring we have a physical organ "not the liver").
Bedford, F. L. (2002). Generality, mathematical elegance, and evolution of numerical/object identity. Brain and Behavioral Sciences. Special issue on the work of Roger Shepard, 24, Article-BBS website (if link is missing, contact author) (This commentary on Shepard's classic paper in part summarizes my theory of numerical/object identity (see below)
Bedford, F. L. (2001). Towards a general law of numerical/object identity. Cahiers de Psychologie Cognitives/Current Psychology of Cognition, 20, 113-175. (whole issue with commentaries, volume 3-4). [Target article] Target Article (pdf) Target article (html file) (This is a very important article which argues for a new theory that integrates space perception, time perception, cross modal interactions, apparent motion and many other issues in perception and cognition. All the phenomena involve a core issue of how it's decided if two samples originate from the same source or two different sources).
See also Table of contents for issue 20, volume 3,4,5 (including titles/authors of commentaries): Table of contents (html)
Bedford, F. L. (2001). Object Identity Theory and the nature of general laws. Cahiers de Psychologie Cognitives/Current Psychology of Cognition, 20, 277-293. (Reply to commentaries) First reply (html) Note: some formatting lost
Bedford, F. L. (2001) The role of object identity and Klein's geometry in cross-modal and other discrepancies. . Cahiers de Psychologie Cognitives/Current Psychology of Cognition, 20, 381-(Reply to additional commentaries) Second reply (html) Note: some formatting lost
Bedford, F. L. (1999). Keeping perception accurate. Trends in Cognitive Sciences, 3, 4-12. Article (pdf) (This article is a concise summary of my views on spatial adaptation and how perception is changed by experience generally.)
Bedford, F. L. (1997). False categories in cognition: The Not-the-Liver fallacy. Cognition, 64, 231-248. Article (pdf) (This article argues that inferring mental organs from dissociations (and double dissociations) leads to false categories in psychology that would be like inferring we have a physical organ "not the liver".)
Bedford, F. L. (1997). Are long-term changes to perception explained by Pavlovian associations or Perceptual Learning Theory? Cognition, 64, 223-230. Article (pdf) (This is a reply to a published attack on my theory of how experience changes perception as applied to the McCollough Effect).
McClosky, M. & Bedford, F. L. (1996) A left-right confusion deficit under dark-room test conditions. (unpublished)
Bedford, F. L. (1995). Localizing the spatial localization system: Helmholtz or Gibson? Psychological Science, 6, 387-388. Article (pdf) (Asks which of two spatial localization systems, egocentric or exocentric, goes away with a spatial deficit.)
Bedford, F. L. (1995) Constraints on perceptual learning: Objects and dimensions. Cognition, 54, 253-297. Article (pdf) (Important article which presents my theory on the McCollough Effect and other contingent aftereffects and how they are connected to prism adaptation in a unified theory of how experience changes perception.)
Bedford, F. L. (1994) Of computer mice and men. Cahiers de Psychologie Cognitvies/ Current Psychology of Cognition, 13, 405-426. Article (pdf) (This article uses an empirical paradigm of writing on a digitizing table, which works like a computer mouse, to better explore adaptation to visual-motor distortion in 2-D space rather than 1-D . One question addressed is whether dimensions of space are independent of one another.)
Bedford, F. L. (1994) A pair of paradoxes and the perceptual pairing process. Cahiers de Psychologie Cognitvies/Current Psychology of Cognition, 13, 60-68. Article (pdf) (Discusses how a paradox can be resolved on how perception is ever changed by experience if all experience comes through perception. Is applied to� cross-modal conflicts such as aftereffects of ventriloquism effect.)
Bedford, F. L. (1993) Perceptual and Cognitive Spatial Learning. Journal of Experimental Psychology: Human Perception and Performance, 19, 517-530. Article (pdf) (Shows how different patterns of generalization and learning occur in two different spatial learning mechanisms- one genuine perceptual adaptation and the other reflecting a more cognitive system. And more on linear constraints in perceptual adaptation.)
Bedford, F. (1993) Perceptual Learning. In D. Medin (Ed.) The Psychology of Learning and Motivation, 30, 1-60. Article (pdf) (Important chapter which lays out my theories of how learning affecting perception compares to other learning processes and what genuine perceptual change is. Empirical results from different paradigms summarized. Also covers my Kleinian transformation geometry work in spatial adaptation and what happens when trying adapting to mappings that are many to one and distort the topology of space.)
Bedford, F. L. & Reinke, K. S. (1993) The McCollough Effect: Dissociating retinal from spatial coordinates. Perception and Psychophysics, 54, 515-526. Article (pdf) (This article shows that a McCollough Effect aftereffect is contingent on retinal orientation and not spatial orientation of the stimulus when the exposure is ambiguous, and moreover cannot be made contingent on spatial orientation when the retinal contingency between color and orientation is removed.)
Bootzin, R. R., Dikman, Z., Perlis, M., Manber, R., & Bedford, F. L. The McCollough Effect: A measure of sleepiness. Sleep Research,
Bedford, F. L. Constraints on learning new mappings between perceptual dimensions. Journal of Experimental Psychology: Human Perception and Performance, 15, 232-248. Article NOTE: link may be broken. (Shows how space adaptation is not learning a list of visual-motor associations and how there is a preference for linear mappings between visual space and proprioceptive space.)
Bedford, F. L. Visual-motor spatial pointing and growth: A mathematical model Abstract
Mansson, B. E. & Bedford, F. L. Illusory misidentification of human faces Abstract
Bedford, F. L. & Harvey, E.M. What plasticity is required in development for pointing in space? Abstract
Bedford, F. L. & Panagos, M. Perceptual learning in the Other Race Effect.